XMind also has filtering and what they call "drill-down" features which might make it more what you're looking for in this case. The second I found boasts a powerful search feature among many, many other features, but at a price. The one thing I didn't see mentioned on their site anywhere was search capabilities. It has no built-in hierarchy, which makes it seem close to what you expressed in your question: It allows you make free associations between various nodes, and connect them when and if you'd like. The first is Scapple from Literature and Latte, the makers of Scrivener. Hopefully, someone with better information will be able to help soon, but a quick, precursory search found a couple of mind mapping packages you might be interested in. I'm not sure if they'll fit the bill, but I thought I'd toss them out for your consideration. The description of what you're looking for immediately brought mind maps to mind (no pun intended, but WOCKA WOCKA WOCKA!).
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